chatehr-clinician-assistant

<!--

COPYRIGHT NOTICE

This file is part of the "Universal Biomedical Skills" project.

Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>

All Rights Reserved.

#

This code is proprietary and confidential.

Unauthorized copying of this file, via any medium is strictly prohibited.

#

Provenance: Authenticated by MD BABU MIA

-->

---

name: chatehr-clinician-assistant

description: EHR Chat Assistant

keywords:

• EHR
• clinical
• summarization
• patient-records
• FHIR

measurable_outcome: Answer 5 clinical queries and generate a discharge summary from a patient record with <10s latency.

license: Apache-2.0

metadata:

author: Stanford Medicine

version: "1.0.0"

compatibility:

• system: Python 3.10+

allowed-tools:

• run_shell_command
• read_file

---

ChatEHR

AI software for clinicians to interact with patient medical records via natural language queries and automatic chart summarization.

When to Use

• Rapid Review: "Summarize the patient's cardiology history."
• Data Extraction: "What was the last creatinine level?"
• Documentation: Generating draft notes or discharge summaries.

Core Capabilities

1. Chart Summarization: Condense complex history into readable notes.
2. QA: Answer specific questions about the patient's data.
3. FHIR Integration: Works with standard FHIR resources.

Workflow

1. Connect: Authenticate with the EHR system (sandbox or secure instance).
2. Select Patient: Load patient context.
3. Query: Submit natural language questions.

Example Usage

User: "Summarize the last 3 oncology visits."

Agent Action:

python -m chatehr.query --patient_id 12345 --prompt "Summarize last 3 oncology visits"

<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->