biomni-general-agent

biomni-general-agent，来自 FreedomIntelligence/OpenClaw-Medical-Skills 的 agent 技能。

读凭据执行命令写文件联网读文件严重 42 · 高危 149FreedomIntelligence/OpenClaw-Medical-Skills

它会碰到什么

扫了多少106 个文本文件，2127 KB

它会碰到什么读凭据执行命令写文件联网读文件

命中总数392 处

命中统计严重 42 · 高 149 · 中 144 · 低 56

逐条看命中（30 条严重或高危）

严重 repo/biomni/agent/a1.py:56cred-paths
```
if os.path.exists(".env"):
```
严重 repo/biomni/agent/a1.py:57cred-paths
```
load_dotenv(".env", override=False)
```

严重 repo/biomni/agent/a1.py:58cred-paths

print("Loaded environment variables from .env")

严重 repo/biomni/config.py:28cred-paths

compatibility with existing .env file structure.

严重 repo/biomni/tool/database.py:494deserialize-unsafe
```
uniprot_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:742deserialize-unsafe
```
interpro_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:844deserialize-unsafe
```
schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1063deserialize-unsafe
```
kegg_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1167deserialize-unsafe
```
stringdb_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1337deserialize-unsafe
```
iucn_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1438deserialize-unsafe
```
pbdb_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1566deserialize-unsafe
```
jaspar_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1670deserialize-unsafe
```
worms_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1767deserialize-unsafe
```
cbioportal_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1859deserialize-unsafe
```
clinvar_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:1949deserialize-unsafe
```
geo_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2045deserialize-unsafe
```
dbsnp_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2138deserialize-unsafe
```
ucsc_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2240deserialize-unsafe
```
ensembl_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2363deserialize-unsafe
```
opentarget_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2461deserialize-unsafe
```
monarch_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2584deserialize-unsafe
```
openfda_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2697deserialize-unsafe
```
gwas_schema = pickle.load(f)
```
严重 repo/biomni/tool/database.py:2798deserialize-unsafe
```
gnomad_schema = pickle.load(f)
```
严重 repo/biomni/tool/pharmacology.py:217deserialize-unsafe
```
mapping = pickle.load(f)
```
严重 repo/biomni/tool/pharmacology.py:220deserialize-unsafe
```
result = pickle.load(f)
```
严重 repo/biomni/tool/pharmacology.py:2013deserialize-unsafe
```
drug_info = pickle.load(f)
```
严重 repo/biomni/tool/pharmacology.py:2016deserialize-unsafe
```
interaction_matrix = pickle.load(f)
```
严重 repo/biomni/tool/pharmacology.py:2019deserialize-unsafe
```
name_mapping = pickle.load(f)
```
严重 repo/biomni/tool/tool_registry.py:99deserialize-unsafe
```
return pickle.load(file)
```

这一栏是扫描器报的事实，不是结论。命中多不等于有毒（安全工具、规则库、示例脚本本来就会包含危险写法），命中少也不等于干净。它和你手上的凭据、文件、网络有什么关系，需要你自己看。

技能内容

<!--

COPYRIGHT NOTICE

This file is part of the "Universal Biomedical Skills" project.

Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>

All Rights Reserved.

This code is proprietary and confidential.

Unauthorized copying of this file, via any medium is strictly prohibited.

Provenance: Authenticated by MD BABU MIA

-->

name: biomni-general-agent

description: Use the local Biomni checkout to orchestrate its 150+ biomedical tools, databases, and know-how workflows for complex research questions.

allowed-tools:

read_file
run_shell_command

At-a-Glance

description (10-20 chars): Omni bio agent
keywords: multi-tool, know-how, tutorials, protocols, databases
measurable_outcome: Execute a Biomni workflow that touches ≥2 tool categories and returns a cited research summary or artifact within 15 minutes per request.

Workflow

Environment: cd repo && pip install . (or follow tutorials env set up). Activate the environment with required GPUs if using heavy models.
Select mode: Choose Standard (full stack), Light (API-only), or Commercial (license-safe) per task.
Plan tools: Query the Know-How library for relevant protocols/databases before executing.
Execute notebooks/scripts: Use repo/tutorials or CLI entrypoints to run pipelines; log tool versions.
Summarize: Provide outputs + citations pulled from the Know-How metadata.

Guardrails

Respect tool/data licenses when selecting Light vs Commercial mode.
Track provenance (tool versions, dataset snapshots) in final response.
Keep workflows modular—reuse Biomni recipes rather than ad-hoc scripts when possible.

References

Full capability list, tool inventory, and tutorial notebooks documented in README.md and repo/tutorials/.

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去原始仓库

它属于哪个仓库

仓库FreedomIntelligence/OpenClaw-Medical-Skills

星标★ 3,010

本站分层T1

该仓技能数897

原文件路径skills/biomni-general-agent/SKILL.md

同一个仓库里的其他技能

看这个仓库的全部 897 个技能